Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2023-10-15 19:55:17,576 [625] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2023-10-15 19:55:17,768 [625] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2023-10-15 19:55:17,775 [625] INFO pulse.unloader: ------------------------------------------------------------------------
2023-10-15 19:55:17,778 [625] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2023-10-15 19:55:17,778 [625] INFO pulse.unloader: ------------------------------------------------------------------------
2023-10-15 19:55:17,815 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:17,816 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:17,817 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:17,817 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:18,032 [625] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2023-10-15 19:55:19,066 [625] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2023-10-15 19:55:19,107 [625] INFO pulse.unloader:
Do an intial solve
2023-10-15 19:55:19,217 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:19,218 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:19,219 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:19,219 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:19,220 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:55:19,857 [625] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-10-15 19:55:19,951 [625] DEBUG UFL_LEGACY: Blocks of each mode:
2023-10-15 19:55:20,215 [625] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-10-15 19:56:09,803 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:09,804 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:09,804 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:09,805 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:09,806 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:10,030 [625] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-10-15 19:56:10,124 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-10-15 19:56:10,367 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-10-15 19:56:14,582 [625] INFO pulse.unloader:
Iteration: 0
2023-10-15 19:56:19,336 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-10-15 19:56:19,390 [625] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-10-15 19:56:24,947 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:24,952 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-10-15 19:56:25,007 [625] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2023-10-15 19:56:25,516 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:25,575 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:25,576 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:25,634 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:25,636 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:56:25,686 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2023-10-15 19:56:25,900 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:25,901 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:25,902 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:25,902 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:25,903 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:56:26,273 [625] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2023-10-15 19:56:26,366 [625] DEBUG UFL_LEGACY: Blocks of each mode:
2023-10-15 19:56:26,627 [625] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2023-10-15 19:57:16,079 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:57:16,080 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:57:16,080 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:57:16,081 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:57:16,082 [625] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2023-10-15 19:57:16,253 [625] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2023-10-15 19:57:16,346 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-10-15 19:57:16,586 [625] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2023-10-15 19:57:20,782 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2023-10-15 19:57:21,012 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,014 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,071 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,073 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,129 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,130 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,182 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2023-10-15 19:57:21,198 [625] INFO pulse.unloader:
Residual: 0.011328623428538194
2023-10-15 19:57:21,199 [625] INFO pulse.unloader:
Iteration: 1
2023-10-15 19:57:21,430 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,431 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,487 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,488 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,544 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,545 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:21,595 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2023-10-15 19:57:25,232 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2023-10-15 19:57:25,462 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,465 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,522 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,523 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,579 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,580 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,631 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2023-10-15 19:57:25,646 [625] INFO pulse.unloader:
Residual: 0.001698010214540216
2023-10-15 19:57:25,647 [625] INFO pulse.unloader:
Iteration: 2
2023-10-15 19:57:25,878 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,880 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,936 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,937 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,993 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:25,994 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:26,044 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2023-10-15 19:57:29,669 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2023-10-15 19:57:29,900 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:29,902 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:29,958 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:29,959 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,016 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,017 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,068 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2023-10-15 19:57:30,084 [625] INFO pulse.unloader:
Residual: 0.00025928769312986966
2023-10-15 19:57:30,085 [625] INFO pulse.unloader:
Iteration: 3
2023-10-15 19:57:30,315 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,316 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,371 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,373 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,428 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,430 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:30,481 [625] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2023-10-15 19:57:34,108 [625] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2023-10-15 19:57:34,339 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,341 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,397 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,399 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,455 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,456 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,506 [625] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2023-10-15 19:57:34,521 [625] INFO pulse.unloader:
Residual: 3.93130429591956e-05
2023-10-15 19:57:34,522 [625] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2023-10-15 19:57:34,761 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,763 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,819 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,820 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,875 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2023-10-15 19:57:34,876 [625] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()